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Image Search Results
Journal: bioRxiv
Article Title: A consensus set of genetic vulnerabilities to ATR inhibition
doi: 10.1101/574533
Figure Lengend Snippet: a, Clonogenic survival of RPE1-hTERT Flag-Cas9 TP53 -/- (WT) and two RPE1-hTERT Flag-Cas9 TP53 -/- APEX2 -/- clones treated with indicated concentrations of ATR inhibitor AZD6738. b, as in a using two CIP2A -/- clones. c, as in a using a POLE3 -/- clone. d, as in a using two POLE4 -/- clones. e, as in a using two C16orf72 -/- clones. Data are from three biologically independent experiments.
Article Snippet: GFP-POLE3 full length and
Techniques: Clone Assay
Journal: bioRxiv
Article Title: A consensus set of genetic vulnerabilities to ATR inhibition
doi: 10.1101/574533
Figure Lengend Snippet: a-c, Immunoblotting to assess loss of protein expression in clonal knockout cell lines. siRNA-mediated knockdown was used to control for antibody specificity in the case of POLE3 and POLE4 antibodies. Antibodies targeting alpha-tubulin (Tubulin) or GAPDH were used as loading controls. Numbers indicate molecular mass in kDa. Asterisks indicate unspecific bands. d, mRNA level analysis of APEX2 after siRNA mediated APEX2 knockdown as assay control and in APEX2 -/- clones. Clone #2 showed mRNA levels similar to parental (WT) cells but has frameshifting mutations (see panel D) and was sensitive to ATR inhibitor treatment (see ).
Article Snippet: GFP-POLE3 full length and
Techniques: Western Blot, Expressing, Knock-Out, Clone Assay
Journal: bioRxiv
Article Title: A consensus set of genetic vulnerabilities to ATR inhibition
doi: 10.1101/574533
Figure Lengend Snippet: a, Whole cell extracts from wild type RPE1-hTERT Flag-Cas9 TP53 -/- (WT) or the indicated POLE4 -/- clones treated with 1 μM camptothecin (CPT) were used for immunoblotting with indicated antibodies. pCHK1 and pRPA refer to phosphorylated proteins; brackets indicate modified amino acid residues. KAP1 served as loading control. b, Whole cell extracts from WT or the indicated POLE3 -/- clone expressing GFP, GFP-POLE3 or GFP-POLE3ΔC were used for immunoblotting with indicated antibodies. GAPDH served as loading control. c, Clonogenic survival of WT or the indicated POLE3 -/- clone expressing GFP, GFP-POLE3 or GFP-POLE3ΔC treated with indicated concentrations of ATR inhibitor AZD6738. Data are from three biologically independent experiments.
Article Snippet: GFP-POLE3 full length and
Techniques: Clone Assay, Western Blot, Modification, Expressing
Journal: bioRxiv
Article Title: A consensus set of genetic vulnerabilities to ATR inhibition
doi: 10.1101/574533
Figure Lengend Snippet: Cell survival of RPE1-hTERT Flag-Cas9 TP53 -/- (WT) or the indicated POLE3 -/- clone expressing GFP, GFP-POLE3 or GFP-POLE3ΔC treated with indicated concentrations of ATR inhibitor (AZD6738) was determined by monitoring growth in an Incucyte instrument. Data are from three biologically independent experiments.
Article Snippet: GFP-POLE3 full length and
Techniques: Expressing
Journal: Nature protocols
Article Title: Generation of CRISPR–Cas9-mediated genetic knockout human intestinal tissue–derived enteroid lines by lentivirus transduction and single-cell cloning
doi: 10.1038/s41596-021-00669-0
Figure Lengend Snippet: Troubleshooting table
Article Snippet: To identify an sgRNA target sequence using the GenScript
Techniques: Negative Control, Ligation, Transformation Assay, Plasmid Preparation, Selection, Passaging, Clone Assay, Concentration Assay, Sequencing